Publications
I list here the main publications organized into distinct research areas. The complete list is available on Google Scholar.
Clinical data analysis
Gusinow R., Górska A., Canziani L.M., Lopez-Rafegas I., Garavito C.A., Tami A., Gentilotti E., Sicuri E., Laouénan C., Ghosn J., Florence A.M., Lahfej N., Mazzaferri F., ..., Tacconelli E.
Latent transition analysis for longitudinal studies of post-acute infection syndromes
Gentilotti E., Alvarez Galavito C., Górska A., Gusinov R., Canziani L.M., De Nardo P., Visentin A., Caponcello M., Di Chiara M., ..., Tacconelli E.
Persistent Low-Grade Inflammation and Post-COVID Condition: Evidence from the ORCHESTRA Cohort
Gentilotti E., Górska A., Tacconelli E.
Research on post-COVID syndrome: current gaps and future perspectives
Gentilotti E., Górska A., Cecchini M.P., Mirandola M., Meroi M., Nardo P.D., Sartori A., Konishi De Toffoli C., Kumar-Singh S., Zanusso G., Monaco S., Tacconelli E. & the ORCHESTRA-UNIVR Study Group
Chemosensory assessment and impact on quality of life in neurosensorial cluster of the post COVID-19 syndrome
Gentilotti E., Górska A., Tami A., Gusinow R., Mirandola M., Baño R., Baena R., ..., Tacconelli E.
Clinical phenotypes and quality of life to define post-COVID-19 syndrome: a cluster analysis of the multinational, prospective ORCHESTRA cohort
Tacconelli E., Goepel S., Gladstone P., Eisenbeis S., Hoelzl F., Buhl M., Górska A., ..., Spitznagel H., Olawumi-Hurter S.
Development and validation of BLOOMY prediction scores for 14-day and 6-month mortality in hospitalised adults with bloodstream infections
Tacconelli E., Górska A., Angelis G., Lammens C., Restuccia G., Huson D.H., ..., Kazma M.
Estimating the Association between Antibiotic Exposure and Colonisation with Antibiotic-resistant Bacteria using Machine-learning Methods
Clinical data standardization and harmonization
Górska A., Canziani L.M., Rinaldi E., Pana Z.D., Beale S., Bai F.M., Boxma-de Klerk B.M., de Bruijn S., Donà D., Ekkelenkamp M.B., Incardona D., Mallon P., Marchetti G.C., Puhan M., Riva A., Simensen V.C., Vaillant M., van der Zalm M.M., van Kuijk S.M.J., van Wingerden S., Judd A., Tacconelli E., Peñalvo J.L.
Learning from Post COVID-19 condition for epidemic preparedness: a variable catalogue for future Post-Acute Infection Syndromes
Puskaric M., Chandramouli B., Osmo T., Gusinow R., Dellacasa C., Rossi E., Cataudella S., Górska A., Rinaldi E.
Privacy-Preserving Workflow for the Cross-Border Federated Analysis of Clinical Data
Tacconelli E., Górska A., Carrara E., Davis R.J., Bonten M., Sartor A., Friedrich A.W., Glasner C., Goossens H., Hasenauer J., Haro J.M., Peñalvo J.L., Sanchez-Niubohk A., Sialm A., Scipione G., Soriano G., Yazdanpana Y., Vorstenbosch E., Jaenisch T.
Challenges of data sharing in European Covid-19 projects: A learning opportunity for advancing pandemic preparedness and response
Meta-analysis automation and systematic review
Górska A., Tacconelli E.
Towards Autonomous Living Meta-Analyses: A Framework for Automation of Systematic Review and Meta-Analyses
Gentilotti E., De Nardo P., Cremonini E., Górska A., Mazzaferri F., Canziani M.L., Hellou M.M., Olchowski Y., Poran I., Leeflang M., Villacian J., Goossens H., Paul M., Tacconelli E.
Diagnostic accuracy of point-of-care tests in acute community-acquired lower respiratory tract infections. A systematic review and meta-analysis
Hellou M.M., Górska A., Mazzaferri F., Cremonini E., Gentilotti E., De Nardo P., Paul M.
Nucleic-acid-amplification tests from respiratory samples for the diagnosis of coronavirus infections: systematic review and meta-analysis
Clinical gut microbiome and metagenomics
Righi E., D. Vecchia I., Auerbach N., Morra M., Górska A., Sciammarella C.
Gut Microbiome Disruption Following SARS-CoV-2: A Review
Righi E., Lambertenghi L., Górska A., Sciammarella C., Ivaldi F., Mirandola M., Sartor A., Tacconelli E.
Impact of COVID-19 and Antibiotic Treatments on Gut Microbiome: A Role for Enterococcus spp.
Arumugam K., Bağcı C., Bessarab I., Beier S., Buchfink B., Górska A., Qiu G., Huson D.H., Williams R.
Annotated bacterial chromosomes from frame-shift-corrected long read metagenomic data
Górska A., Peter S., Willmann M., Autenrieth I., Schlaberg R., Huson D.H.
Dynamics of the human gut phageome during antibiotics treatment
Huson D., Beier S., Flade I., Górska A., El-Hadidi M., Mitra S., and others.
MEGAN Community Edition — Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data
RNA structure and molecular dynamics
Górska A., Markowska-Zgrajek A., Równicki M., Trylska J.
Scanning of 16S ribosomal RNA for peptide nucleic acid targets
Górska A., Jasiński M., Trylska J.
MINT: Software to Identify Motifs and Short-Range Interactions in Trajectories of Nucleic Acids